Maximiliano Beckel, Bruno Kaufman, Marcelo Yanovsky, ArielChernomoretz, (2021 bioRxiv, submitted) Mining divergent and conserved signals in 5’ splicing sitesequences.

E Mancini, A Rabinovich, J Iserte, M Yanovsky, A Chernomoretz. Bioinformatics. 2021 March.  ASpli: Integrative analysis of splicing landscapes through RNA-Seq assays. https://doi.org/10.1093/bioinfor-matics/btab141 
 
A Chernomoretz, M Balparda, L La Grutta, A Calabrese, G Martinez, Ma Soledad Escobar, G Sibilla. Forensics Science International: Reports. 2020 Dec; 2 (100132). . GENis, an open source multi-tier forensic DNA information system.
 
Urán Landaburu L, Berenstein AJ, Videla S, Maru P, Shanmugam D, Chernomoretz A, Agüero F. Nucleic Acids Res. 2020 Jan 8;48(D1):D992-D1005 (co-corresponding autor) TDR Targets 6: driving drug discovery for human pathogens through intensive chemogenomic data integration.
 
Menden MP, Wang D, Mason MJ, Szalai B, Bulusu KC, Guan Y, Yu T, Kang J, Jeon M, Wolfinger R, Nguyen T, Zaslavskiy M; AstraZeneca-Sanger Drug Combination DREAM Consortium, Jang IS, Ghazoui Z, Ahsen ME, Vogel R, Neto EC, Norman T, Tang EKY, Garnett MJ, Veroli GYD, Fawell S, Stolovitzky G, Guinney J, Dry JR, Saez-Rodriguez J. Nat Commun. 2019 Jun 17;10(1):2674. (as part of DREAM consortium). Community assessment to advance computational prediction of cancer drug combinations in a phar- macogenomic screen.
 
Altszyler E, Ventura AC, Colman-Lerner A, Chernomoretz A, PLoS One 2017 Jun 29 Ultrasensitivity in signaling cascades revisited: Linking local and global ultrasensitivity esti- mations.
 
Bracalente C, Ibañez IL, Berenstein A, Notcovich C, Cerda MB, Klamt F, Chernomoretz A, Durán H. Oncotarget. 2016 May 10 Reprogramming human A375 amelanotic melanoma cells by catalase overexpression: Upregu-lation of antioxidant genes correlates with regression of melanoma malignancy and with malig-nant progression when downregulated.
 
Piñero J, Berenstein A, Gonzalez-Perez A, Chernomoretz A, Furlong LI, Sci Rep. 2016 Apr 15;6:24570. Uncovering disease mechanisms through network biology in the era of Next Generation Se-quencing.
 
Berenstein AJ, Magariños MP, Chernomoretz A, Agüero F. PLoS Negl Trop Dis. 2016 Jan 6;10(1):e000430 A Multilayer Network Approach for Guiding Drug Repositioning in Neglected Diseases.
 
Schlaen RG, Mancini E, Sanchez SE, Perez-Santangelo S, Rugnone ML, Simpson CG, Brown JW, Zhang X, Chernomoretz A, Yanovsky MJ, Proc Natl Acad Sci U S A. 2015 Jul 28l112(30):9382-710. Fibulin-2 is a key mediator of the pro-neurogenic effect of TGF-beta1 on adult neural stem cells, Radice PD, Mathieu P, Leal MC, Farias MI, Ferrari C, Puntel M, Salibe M, Chernomoretz A, Pitossi FJ, Mol Cell Neurosci. 2015 Jul; 67:75-83. The spliceosome assembly factor GEMIN2 attenuates the effects of temperatura on alternative splicing and circadian rythms.
 
Berenstein AJ, Piñero J, Furlong LI, Chernomoretz A, PLoS One. 2015 Apr 9;10(4):e0122477. Mining the mopdular structure of protein interaction networks.
 
Álvarez-Fernández C, Tamirisa S, Prada F, Chernomoretz A, Podhajcer O, Blanco E, Martín-Blanco E, PLoS Genet. 2015 Feb 3;11(2):e1004965. Identification and functional analysis of healing regulators in Drosophila
 
Alt- szyler E, Ventura A, Colman-Lerner A, Chernomoretz A. Phys Biol. 2014 Oct 14;11(6):066003. Impact of upstream and downstream constraints on a signaling module's ultrasensitivity.
 
Perez-Santángelo S, Mancini E, Francey LJ, Schlaen RG, Chernomoretz A, Hogenesch JB, Yanovsky MJ. Proc Natl Acad Sci U S A. 2014 Oct 21;111(42):15166-71. Role for LSM genes in the regulation of circadian rhythms.
 
Ventura AC, Bush A, Vasen G, Goldín MA, Burkin- shaw B, Bhattacharjee N, Folch A, Brent R, Chernomoretz A, Colman-Lerner A. Proc Natl Acad Sci U S A. 2014 Sep 16;111(37):E3860-9. Utilization of extracellular information before ligand-receptor binding reaches equilibrium ex- pands and shifts the input dynamic range.
 
Rugnone ML, Faigón Soverna A, Sanchez SE, Schlaen RG, Hernando CE, Seymour DK, Mancini E, Chernomoretz A, Weigel D, Más P, Yanovsky MJ. Proc Natl Acad Sci U S A. 2013 Jul 1. LNK genes integrate light and clock signaling networks at the core of the Arabidopsis oscilla- tor.
 
Simonetti FL, Teppa E, Cher- nomoretz A, Nielsen M, Marino Buslje C., Nucleic Acids Res. 2013 Jul 1;41(W1):W8-W14. Epub 2013 May 28. MISTIC: mutual information server to infer coevolution.
 
A. Bush, A. Chernomoretz, R. Yu, A. Gordon, A. Colman -Lerner, 2012,Current Protocols in Molecular Biology, Chapter 14, Unit 14:18, USA. Using Cell-ID 1.4 with R for microscope-based cytometry.
 
E. Lavia, A. Chernomoretz, J. M. Buldú, M. Zanin, P. Balenzuela, International Journal of Bifurca- tion and Chaos, 22, 1250180 (2012). Modeling the evolution of item rating networks using time-domain preferential attachment.
 
Martínez Tosar L.J. , Thomas M.A., Baez M.V. ,Ibañez I., Chernomoretz A., Boccaccio G.L. Frontiers in Bio- science, S4, 432-452, (2012). Staufen: From embryo polarity to the stress response and neurodegeneration.