Research area
Biochemistry and structural biology

PROTEIN STRUCTURE-FUNCTION AND ENGINEERING LABORATORY
Research
Our group has been investigating the molecular mechanisms involving proteins and nucleic acids in two virus models representative of DNA and RNA viruses and both of strong public health impact, and also selected for being minimal biological pathogenic entities. The human papillomavirus (HPV, 8 kbp DNA genome) was the first virus to be associated with cancer and partakes in uterine and oropharyngeal cancers. We have been addressing the biochemical mechanisms involved in oncogenesis (E6 and E7), transcription regulation (E2) and capsid assembly (L1). The respiratory syncytial virus (RSV, 15 kb RNA genome) is responsible for bronchiolitis in infants, immunocompromised and elderly patients. We have been investigating how the key replication proteins (N, P, M2-1, and L) interact and assemble in replication complexes, and the protein responsible for it s anti-interferon activity (NS1). During the last five years both systems led us to investigate their properties to form biomolecular condensates, recently discovered dynamic membraneless structures based on a chemical principle of liquid-liquid phase separation (LLPS), a field that revolutionized our understanding of cellular biochemistry, function and pathology, present in all kingdoms of life. We have dissected the main players and the accessory roles of the viral proteins involved in the assembly of RSV condensates, while other groups showed that viral replication and assembly factories are indeed liquid membraneless condensates. We also investigated the condensation mechanism of the nucleoprotein of SARS CoV2 with RNA. On the HPV front we established a condensation mechanism between the master regulator E2 and the transcriptional regulator p53 related to a replication inhibition mechanism. In doing so, we also determined a strong tendency of p53 itself to form condensates and entering an amyloid pathway, similar to neuropathies, that is being the focus of study as a likely cause of the gain-of-function activity of p53 in triggering cancer, given that it is the most mutated protein in cancer, in 50% of all tumors. We are focusing on p53 amyloids as neoantigens and aim at producing selective antibody tools for the clinic. Current understanding of assembly and modulation of condensates is at the center of fundamental understanding behind physiology and pathology, and provides novel platforms for drug discovery only beginning to emerge.
Skills & tools
Our lab is multidisciplinary covering from biochemistry and biophysics to cellular work. We have expertise in high yield expression of recombinant proteins in bacteria, engineering, purification, fragmentation, chemical modification, and peptides. Analytical tools include UV, fluorescence, circular dichroism, stopped-flow and NMR spectroscopies. In addition, reversed phase HPLC, SEC-MALS, dynamic light scattering (DLS), Isothermal titration calorimetry (ITC). We also have expertise in murine monoclonal antibody production, fine screening, high yield purification, analytical development, immunochemistry, immunohistochemistry, ELISA and so forth. We also work with eukaryotic transfection models, virus titration, infection (RSV), and immunofluorescence as well as quantitative advanced fluorescence and brightfield microscopy.
Collaboration interests
Academia
- Transmission and cryoelectron microscopy
- Virus biology
- p53 cancer models
- Physics of biomolecular condensation
Industry
- Protein, enzyme, peptide and nucleic acid related projects with the biotech sector
- Services for protein and biomolecule analysis
- Novel antibody developments for diagnostics
- Biomolecular condensates based drug discovery platforms
Selected publications
- BORKOSKY, Silvia S., et al. Experimental kinetic mechanism of P53 condensation-amyloid aggregation. Biophysical Journal, 2025, vol. 124, no 10, p. 1658-1673.
- PERALTA‐MARTINEZ, Ramon, et al. Protein–RNA condensation kinetics via filamentous nanoclusters. Protein Science, 2025, vol. 34, no 6, p. e70136.
- VISENTIN, Araceli, et al. Assembly of the tripartite and RNA condensates of the respiratory syncytial virus factory proteins in vitro: role of the transcription antiterminator M2-1. Viruses, 2023, vol. 15, no 6, p. 1329
- SALGUEIRO, Mariano, et al. Molten globule driven and self-downmodulated phase separation of a viral factory scaffold. Journal of Molecular Biology, 2023, vol. 435, no 16, p. 168153.
- SUSANA BORKOSKY, Silvia, et al. Biomolecular Condensation of the Human Papillomavirus E2 Master Regulator with p53: Implications in Viral Replication. Journal of Molecular Biology.
- LOPEZ, Nora, et al. Deconstructing virus condensation. PLoS pathogens, 2021, vol. 17, no 10, p. e1009926.

Principal investigator
Gonzalo Prat Gay, PhD
- Virus, cancer
- protein biophysics
- biomolecular condensation
- p53
- protein-RNA
- antibodies